magazine articles

  1. C. T. John. What Value Could Fractals Add to Biomedical Image Analysis? Biomedical Computation Review, p. 29, November 16, 2017.

journal papers

  1. C. T. John, A. Seth, M. H. Schwartz, S. L. Delp. Contributions of muscles to mediolateral ground reaction force over a range of walking speeds. Journal of Biomechanics, vol 45, pp 2438-2443, 2012.
  2. C. T. John, F. C. Anderson, J. S. Higginson, S. L. Delp. Stabilisation of walking by intrinsic muscle properties revealed in a three-dimensional muscle-driven simulation. Computer Methods in Biomechanics and Biomedical Engineering, pp 1-12, 2012.
  3. C. A. Chen, W. Lu, C. T. John, B. A. Hargreaves, S. B. Reeder, S. L. Delp, R. A. Siston, G. E. Gold. Multi-Echo IDEAL-GRE Water-Fat Separation for Rapid Assessment of Cartilage Morphology--Initial Experience. Radiology 252(2): 561-567, 2009.
  4. S. L. Delp F. C. Anderson, A. S. Arnold, P. Loan, A. Habib, C. T. John, E. Guendelman, D. G. Thelen. OpenSim: Open-source Software to Create and Analyze Dynamic Simulations of Movement. IEEE Transactions on Biomedical Engineering 54(11): 1940-1950, 2007.
  5. C. T. John. All Bézier Curves Are Attractors of Iterated Function Systems. New York Journal of Mathematics 13(7): 107-115, 2007.

book

  1. C. T. John. PhorbiDden PhooD: Real Secrets to Mastering the PhD Adventure. CafePress, 177 pages, 2013.

book chapter

  1. C. T. John. Visualization by Subdivision: Two Applications for Future Graphics Platforms. In E. John and J. Rubio (eds.), Unique Chips and Systems, chapter 9, pp. 239-258, CRC Press, 2008.

technical reports

  1. C. T. John. Thoughts on Hybrid Systems. The University of Texas at Austin, Department of Computer Sciences, Technical Report CS-TR-03-22, 6 pages, 2003.
  2. C. T. John, M. P. Marder. Cloud Formation: Simulating the Evolution of Water Droplet Populations. Center for Nonlinear Dynamics, Department of Physics, University of Texas at Austin, Austin, TX. 20 pages, 2003.

conference paper

  1. C. T. John. Visualization by Subdivision: Two Applications for Future Graphics Platforms. Workshop on Unique Chips and Systems (UCAS-1), pages 12-19, Austin, Texas, USA, March 20, 2005.

conference presentations

  1. C. T. John, F. C. Anderson, E. Guendelman, J. S. Higginson, S. L. Delp. Long-Duration Muscle-Actuated Simulations of Walking at Multiple Speeds. American Society of Biomechanics, Stanford, California, USA, August 22-25, 2007.
  2. C. T. John, F. C. Anderson, E. Guendelman, J. S. Higginson, S. L. Delp. Generating 3D Muscle-Actuated Simulations of Normal and Pathological Walking. Dynamic Walking III, Mariehamn, Åland, Finland, June 25-29, 2007.

invited presentations

  1. C. T. John. Can computers tell us how to keep people from falling? Selected for presentation at Opportunity Job Fair, Stanford University School of Engineering, January 28, 2011.
  2. C. T. John. How can a CS researcher focus their career on biomechanics? Seminar on Human, Avatar, and Robot Motion, Stanford University, January 25, 2011.
  3. C. T. John. Can mathematics cure all walking disorders? Mathematical & Computational Biology Seminar, Department of Mathematics, UC-Berkeley, December 9, 2009.
  4. C. T. John. Non-technical speech on human walking research, including passive dynamics, potential energy, kinetic energy, and gravity and their roles in walking and other movements, during the class Dance 139: Liquid Flow, Intermediate Modern Dance, at Stanford University, October 2, 2009.
  5. C. T. John. Slicer & Simbios. SimTK Tech Meeting, National Center for Physics-Based Simulation of Biological Structures (Simbios), Stanford University, February 12, 2007.
  6. C. T. John. Generating 3D Muscle-Actuated Simulations of Movement. Manipulation Group Meeting, Stanford Robotics Laboratory, Department of Computer Science, Stanford University, September 12, 2006.
  7. C. T. John. Image Processing with Slicer. Graphics Café, Computer Graphics Laboratory, Department of Computer Science, Stanford University, August 25, 2005.
  8. C. T. John. Features Added to Slicer Image Editor. NA-MIC Programming Week, Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, June 28, 2005.
  9. C. T. John. Collaboration between Simbios and NA-MIC. NA-MIC Programming Week, Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, June 28, 2005.
  10. C. T. John. Subdivision of Plane Curves. Undergraduate Thesis Defense. Supervisor: Chandrajit L. Bajaj, PhD. Second Reader: Sean Keel, PhD. April 28, 2003.

invited reviewer

  1. Journal of Biomechanics, 2010
  2. SIGGRAPH (ACM Transactions on Graphics), 2009
  3. Computers & Graphics, 2008

conference abstracts

  1. S. R. Hamner, C. T. John, J. S. Higginson, S. L. Delp. Muscle Contributions to Propulsion and Support during Running. American College of Sports Medicine (ACSM) Annual Meeting, Seattle, Washington, USA, May 27-30, 2009.
  2. S. R. Hamner, C. T. John, J. S. Higginson, S. L. Delp. Muscle Contributions to Support and Progression during Running. Gait and Clinical Movement Analysis Society, Denver, Colorado, USA, March 10-13, 2009.
  3. S. R. Hamner, C. T. John, F. C. Anderson, J. S. Higginson, S. L. Delp. Reducing Residual Forces and Moments in a Three-Dimensional Simulation of Running. North American Congress on Biomechanics, Ann Arbor, Michigan, USA, August 5-9, 2008.
  4. F. C. Anderson, E. Guendelman, P. Loan, A. Habib, C. John, A. Arnold, D. Thelen, S. Delp. OpenSim: An Open-Source Platform for Simulating and Analyzing Musculoskeletal Dynamics. American Society of Biomechanics, Stanford, California, USA, August 22-25, 2007.
  5. C. A. Chen, C. T. John, B. A. Hargreaves, S. B. Reeder, S. L. Delp, R. A. Siston, G. E. Gold. Multi-Echo IDEAL-GRE Water-Fat Separation for Rapid Assessment of Cartilage Morphology. ISMRM-ESMRMB (International Society for Magnetic Resonance in Medicine - European Society for Magnetic Resonance in Medicine and Biology) Joint Annual Meeting, Berlin, Germany, May 19-25, 2007.
  6. F. C. Anderson, C. T. John, E. Guendelman, A. S. Arnold, S. L. Delp. SimTrack: Software for Rapidly Generating Muscle-Actuated Simulations of Long-Duration Movement. International Symposium on Biomedical Engineering, Taipei, Taiwan, December 14-16, 2006.

conference posters

  1. C. T. John, M. D. Fox, M. Q. Liu, M. H. Schwartz, S. L. Delp. Muscle Contributions to Medial-Lateral Acceleration of the Body during Walking. Proceedings of the American Society of Mechanical Engineers (ASME) Summer Bioengineering Conference, Resort at Squaw Creek, Olympic Valley, CA, June 17-21, 2009.
  2. S. R. Hamner, C. T. John, S. L. Delp. Muscle Contributions to Propulsion and Support During Running. Biomedical Computation at Stanford (BCATS), Stanford, California, USA, October 25, 2008.
  3. S. R. Hamner, C. T. John, F. C. Anderson, J. S. Higginson, S. L. Delp. Reducing Residual Forces and Moments in a Three-Dimensional Simulation of Running. North American Congress on Biomechanics 2008, Ann Arbor, Michigan, USA, August 5-9, 2008.
  4. C. T. John, F. C. Anderson, E. Guendelman, J. S. Higginson, S. L. Delp. Rapid Generation of 3D Muscle-Driven Simulations of Human Walking. Biomedical Computation at Stanford (BCATS), Stanford, California, USA, October 27, 2007.
  5. S. L. Delp, F. C. Anderson, A. S. Arnold, P. Loan, A. Habib, C. T. John, A. Seth, E. Guendelman, D. G. Thelen, J. A. Reinbolt. OpenSim: Open-source Software for Neuromuscular Biomechanics. Life in Motion Bio-X Symposium, Stanford, California, USA, October 25, 2007.
  6. C. T. John, F. C. Anderson, E. Guendelman, A. S. Arnold, S. L. Delp. An Algorithm for Generating Muscle-Actuated Simulations of Long-Duration Movement. Biomedical Computation at Stanford (BCATS), Stanford, California, USA, October 21, 2006.
  7. C. T. John, S. L. Delp. From Biomedical Images to Geometric Models. Biomedical Computation at Stanford (BCATS), Stanford, California, USA, October 15, 2005.
  8. C. T. John. Characterization of Quadratic Bézier Splines as Attractors of Iterated Function Systems. Nonlinear Dynamics and Pattern Formation Conference, Austin, Texas, USA, June 2000.





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